Date published: 2026-5-16

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NSUN3 Inhibitors

NSUN3 inhibitors, as a chemical classification, primarily focus on the disruption of the enzyme's RNA methyltransferase activity, which is central to mitochondrial tRNA methylation. Given the specificity and importance of RNA methylation, particularly in mitochondrial function, targeting NSUN3 requires a nuanced approach to ensure that the desired inhibitory effect is achieved without inadvertently affecting other cellular processes. Most inhibitors in this category either directly or indirectly interfere with the RNA methylation process.

A significant fraction of the chemicals in this class, such as 5-Azacytidine, Decitabine, and RG108, are analogs of cytosine or adenosine that get incorporated into RNA or DNA. Their incorporation can alter the native structure or prevent methyl groups from being added, hence indirectly affecting NSUN3's function. Others, like Sinefungin, directly target the methyltransferase action by competing for the binding sites, effectively reducing the enzyme's ability to methylate its targets. Another strategy is the inhibition of associated pathways. For instance, 3-Deazaneplanocin A and its analog DZNEP disrupt methylation processes by affecting the S-adenosylhomocysteine hydrolase, a key component in methyl group transfers.

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Items 1 to 10 of 11 total

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Product NameCAS #Catalog #QUANTITYPriceCitationsRATING

5-Azacytidine

320-67-2sc-221003
500 mg
$280.00
4
(1)

When incorporated into RNA, 5-AzaC mimics cytidine, potentially disrupting NSUN3's ability to recognize and methylate its target cytosines.

RG 108

48208-26-0sc-204235
sc-204235A
10 mg
50 mg
$131.00
$515.00
2
(1)

Primarily a DNA methyltransferase inhibitor, its structural interference might affect RNA methyltransferases like NSUN3 by binding to the enzyme's active site.

5-Aza-2′-Deoxycytidine

2353-33-5sc-202424
sc-202424A
sc-202424B
25 mg
100 mg
250 mg
$218.00
$322.00
$426.00
7
(1)

Being an analog, it can be incorporated into RNA, thereby affecting NSUN3's recognition and methylation of genuine target residues.

Adenosine, periodate oxidized

34240-05-6sc-214510
sc-214510A
25 mg
100 mg
$119.00
$364.00
(0)

This compound modifies adenosine residues, possibly altering RNA structures that NSUN3 targets, leading to reduced binding and methylation.

Sinefungin

58944-73-3sc-203263
sc-203263B
sc-203263C
sc-203263A
1 mg
100 mg
1 g
10 mg
$271.00
$5202.00
$40368.00
$704.00
4
(1)

Acts as an inhibitor by mimicking the methyl donor S-adenosylmethionine (SAM), potentially competing with SAM for binding to NSUN3 and halting the methylation process.

Meclofenamic Acid

644-62-2sc-211780
5 mg
$402.00
(0)

Although it primarily targets other RNA methyltransferases, its interaction may obstruct NSUN3's active sites or RNA-binding domains.

Amiloride

2609-46-3sc-337527
1 g
$296.00
7
(1)

Affects various cellular processes, including ion homeostasis, which can indirectly impact NSUN3's localization or stability in mitochondria.

GSK-3 Inhibitor IX

667463-62-9sc-202634
sc-202634A
sc-202634B
1 mg
10 mg
50 mg
$58.00
$188.00
$884.00
10
(1)

As an analog of 3-Deazaneplanocin A, DZNEP reduces available methyl groups, affecting the methylation capability of NSUN3.

Ribavirin

36791-04-5sc-203238
sc-203238A
sc-203238B
10 mg
100 mg
5 g
$63.00
$110.00
$214.00
1
(1)

While its primary action is against viral RNA, its incorporation into host RNA might also affect structures or sequences targeted by NSUN3.

1-Aminocyclopentanecarboxylic acid

52-52-8sc-202392
1 g
$23.00
(0)

By inhibiting SAM synthesis, it reduces the availability of the primary methyl group donor, thus affecting NSUN3's methylation activity.