Date published: 2026-5-16

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Dimethyl Histone H3 Inhibitors

Dimethyl Histone H3 inhibitors are a class of chemical compounds that specifically target and inhibit the dimethylation of histone H3 proteins. Histones are proteins that play a crucial role in DNA packaging and gene regulation within the cell nucleus. They form part of the nucleosome structure, around which DNA is wound, and their chemical modifications influence the accessibility of DNA to transcription factors and other regulatory proteins. Histone H3, one of the main histone proteins, can undergo a variety of post-translational modifications, including methylation. Methylation of histone H3 at specific lysine residues, such as lysine 9 (H3K9) or lysine 27 (H3K27), is known to affect chromatin structure and gene expression, often serving as markers for gene repression or activation. Dimethylation, in particular, represents the addition of two methyl groups to these lysine residues, a process that can significantly impact chromatin dynamics.

Dimethyl Histone H3 inhibitors interfere with enzymes that catalyze the dimethylation of histone H3, such as histone methyltransferases. By preventing the addition of methyl groups at specific sites on histone H3, these inhibitors can lead to changes in chromatin structure, affecting the transcriptional regulation of associated genes. Such inhibitors are often highly selective, targeting specific methylation marks like H3K9me2 or H3K27me2, and are used extensively in research to study the epigenetic regulation of gene expression. The use of these inhibitors can help scientists understand how histone modifications contribute to cellular processes such as differentiation, proliferation, and apoptosis. Through their ability to modulate the epigenetic landscape, dimethyl histone H3 inhibitors serve as valuable tools in uncovering the molecular mechanisms that govern chromatin biology and gene regulation.

SEE ALSO...

Product NameCAS #Catalog #QUANTITYPriceCitationsRATING

Quercetin

117-39-5sc-206089
sc-206089A
sc-206089E
sc-206089C
sc-206089D
sc-206089B
100 mg
500 mg
100 g
250 g
1 kg
25 g
$11.00
$17.00
$110.00
$250.00
$936.00
$50.00
33
(2)

Quercetin could downregulate Dimethyl Histone H3 by inhibiting the activity of specific histone methyltransferases responsible for H3K4 and H3K9 methylation.

Sinefungin

58944-73-3sc-203263
sc-203263B
sc-203263C
sc-203263A
1 mg
100 mg
1 g
10 mg
$271.00
$5202.00
$40368.00
$704.00
4
(1)

Sinefungin may compete with the methyl donor S-adenosylmethionine, thereby reducing the methylation activity of histone methyltransferases on Histone H3.

Mocetinostat

726169-73-9sc-364539
sc-364539B
sc-364539A
5 mg
10 mg
50 mg
$214.00
$247.00
$1463.00
2
(1)

By inhibiting class I and IV histone deacetylases, Mocetinostat could indirectly lead to a decrease in Dimethyl Histone H3 by altering chromatin structure and accessibility.

MS-275

209783-80-2sc-279455
sc-279455A
sc-279455B
1 mg
5 mg
25 mg
$24.00
$90.00
$212.00
24
(2)

MS-275 selectively inhibits class I histone deacetylases, which could result in a reduced recruitment of methyltransferases to Histone H3, decreasing its dimethylation.

Suberoylanilide Hydroxamic Acid

149647-78-9sc-220139
sc-220139A
100 mg
500 mg
$133.00
$275.00
37
(2)

Suberoylanilide Hydroxamic Acid is a histone deacetylase inhibitor that could lead to the hyperacetylation of histones, potentially hindering the methylation process of Histone H3.

GSK126

1346574-57-9sc-490133
sc-490133A
sc-490133B
1 mg
5 mg
10 mg
$92.00
$243.00
$306.00
(0)

GSK126 directly inhibits the enzymatic activity of EZH2, which is a primary methyltransferase for Histone H3, thus leading to a reduction in its dimethylation.

A-366

1527503-11-2sc-507495
10 mg
$195.00
(0)

A-366 is a potent inhibitor of G9a/GLP methyltransferases, directly reducing the dimethylation of Histone H3 at lysine 9.

MS023

1831110-54-3sc-507463
5 mg
$165.00
(0)

MS023 inhibits type I protein arginine methyltransferases, which may subsequently decrease the dimethylation of arginine residues on Histone H3.