FNDC5 CRISPR/Cas9 KO Plasmid (m): sc-436418
- Target species: mouse
- 20 µg of transfection-ready, purified plasmid DNA; Suitable for up to 20 transfections
- FNDC5 CRISPR/Cas9 Knockout (KO) Plasmid (m) is a pool of plasmids, each encoding Cas9 nuclease and a target-specific 20 nt guide RNA (gRNA) designed for maximum knockout efficiency using sequences derived from the GeCKO v2 library
- gRNA sequences direct Cas9 to induce site-specific double-strand breaks (DSBs) in the FNDC5 genomic locus, resulting in gene knockout through non-homologous end joining (NHEJ)
- FNDC5 HDR Plasmid (m) (sc-436418-HDR) is recommended for co-transfection with FNDC5 CRISPR/Cas9 KO Plasmid (m) to enable selection of successfully edited cells through HDR-mediated integration of a puromycin resistance cassette and RFP reporter gene
- FNDC5 HDR Plasmid (m) is a pool of plasmids, each containing a homology-directed repair (HDR) template corresponding to the gRNA target sites in the FNDC5 CRISPR/Cas9 KO Plasmid (m)
- Each HDR plasmid contains two ~800 bp homology arms flanking the puromycin resistance and RFP cassettes, designed to bind genomic DNA sequences surrounding the Cas9-induced double-strand break site and facilitate precise HDR-mediated integration
- The puromycin resistance and RFP genes are flanked by LoxP sites, enabling removal of selection markers via Cre recombinase (Cre Vector: sc-418923) after establishing stable knockout cell lines
Ordering Information
| Product Name | Catalog # | UNIT | Price | Qty | FAVORITES | |
FNDC5 CRISPR/Cas9 KO Plasmid (m) | sc-436418 | 20 µg | $397.00 | |||
FNDC5 HDR Plasmid (m) | sc-436418-HDR | 20 µg | $445.00 |
Overview
Mouse Fndc5 encodes fibronectin type III domain–containing protein 5 (FNDC5), a type I membrane protein best known as the precursor of the cleaved myokine irisin. FNDC5 expression is linked to PGC-1α–regulated exercise responses and contributes to metabolic homeostasis, influencing adipocyte browning programs, mitochondrial function, and inter-tissue signaling between muscle and adipose compartments. In the nervous system, FNDC5/irisin signaling has been studied for roles in neurotrophic support, synaptic plasticity, and stress responses. Altered Fndc5/FNDC5 regulation has been associated in experimental models with obesity, insulin resistance, nonalcoholic fatty liver disease, and neurodegeneration-relevant phenotypes, supporting mechanistic investigation of metabolic and neurobiology pathways.
FNDC5 CRISPR/Cas9 KO Plasmid (m) is a pool of plasmids designed for targeted disruption of the Fndc5 gene in mouse cell lines. Each plasmid in the pool co-expresses a unique sgRNA, targeting a distinct site within the Fndc5 locus, alongside the Streptococcus pyogenes Cas9 nuclease, and encodes GFP to enable fluorescent identification and enrichment of successfully transfected cells. This multi-guide strategy increases the likelihood of inducing frameshifts or deletions that produce a functional knockout, offering a more robust alternative to single-guide approaches. DSBs induced at multiple sites are resolved through non-homologous end joining (NHEJ) or, when used with the included HDR donor template, homology-directed repair (HDR) at a defined target site within the locus.
When used in conjunction with the RFP-expressing HDR donor, GFP and RFP fluorescence can be used together to distinguish transfected from edited cell populations, streamlining flow cytometry-based sorting and clone selection workflows.
Homology-Directed Repair (HDR) Donor — Puromycin Cassette with RFP Reporter
For applications requiring confirmed, selectable knockout clones, FNDC5 HDR Plasmid (m) includes an HDR donor construct containing a puromycin resistance cassette (PuroR) and a red fluorescent protein (RFP) reporter, flanked by homology arms specific to a defined Fndc5 target site.
When co-transfected with FNDC5 CRISPR/Cas9 KO Plasmid (m):
- The PuroR-RFP cassette integrates at the Cas9 cut site via HDR, disrupting the Fndc5 open reading frame.
- RFP fluorescence provides an immediate visual indicator of successful integration, enabling fluorescence-based identification or sorting of edited cells prior to or alongside puromycin selection.
- Successfully edited cells are confirmed through puromycin resistance, substantially reducing clone screening burden.
- This selection strategy is ideal for generating stable, clonal KO cell lines for downstream functional studies, drug screening, or model development.
Cre-lox Cassette Removal System
The HDR donor construct features loxP sites flanking the PuroR-RFP selection cassette to allow clean marker removal following clone confirmation. Transient expression of Cre recombinase via the included Cre Vector: sc-418923 excises the cassette, leaving a minimal residual loxP site within the Fndc5 locus and eliminating potential confounding effects on downstream assays.
This two-step approach:
- Minimizes disruption to local chromatin architecture and neighboring regulatory elements
- Restores a near-native genomic context at the edited locus
- Enables reuse of the puromycin selection strategy in the same cell line for additional edits
Key Features
- gRNA targeting Fndc5 exon(s) critical for FNDC5 function
- Co-expression of SpCas9 and sgRNA from a single plasmid for simplified delivery
- HDR donor with puromycin resistance for positive clone selection
- loxP-flanked PuroR cassette with Cre recombinase vector for seamless marker removal
- Supplied ready to use for delivery by transfection
For Research Use Only. Not Intended for Diagnostic or Therapeutic Use.