Forskolin is renowned for its ability to stimulate adenylyl cyclase, thereby amplifying cAMP levels within the cell. This surge in cAMP activates protein kinase A, which targets numerous proteins for phosphorylation, potentially altering their activity states. Ionomycin exerts its effects by increasing intracellular calcium concentrations, a critical factor for proteins that are regulated by calcium ions. This increase can activate a suite of calcium-dependent protein kinases, which in turn may phosphorylate and thereby regulate proteins akin to WDR69. Phorbol esters, exemplified by PMA, are known to directly bind to and activate protein kinase C. This activation results in the phosphorylation of serine and threonine residues on a multitude of proteins, which may include those that are part of or regulated by the PKC signaling pathways. Similarly, analogs of cAMP, such as 8-Bromo-cAMP, bypass cellular receptors and directly activate PKA, leading to targeted phosphorylation events.
Epigenetic modulators like 5-Azacytidine and Trichostatin A alter the transcriptional landscape within cells. By inhibiting DNA methyltransferases and histone deacetylases, respectively, these compounds can result in the upregulation of genes and the consequent increase in protein expression, which could affect the levels and function of numerous proteins. Within the realm of kinase signaling, LY294002, U0126, SB203580, and PD98059 are notable for their roles in modulating the activity of key signaling pathways. By targeting PI3K, MEK, and p38 MAPK respectively, these inhibitors can lead to compensatory responses within the cell that might activate or enhance the expression of proteins involved in those pathways. Thapsigargin, by disrupting calcium homeostasis through inhibition of the SERCA pump, can provoke a rise in cytosolic calcium levels, similarly leading to the activation of calcium-dependent signaling processes. Okadaic Acid, a potent inhibitor of protein phosphatases, sustains proteins in their phosphorylated state, prolonging their activated condition.
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