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5-Ethynyl-2′-deoxyuridine (CAS 61135-33-9)

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Alternate Names:
5-Ethynyl-2′-deoxyuridine is also known as EdU.
Application:
5-Ethynyl-2′-deoxyuridine is a nucleoside analog of thymidine, that is often used for short-term DNA synthesis in tissue culture
CAS Number:
61135-33-9
Purity:
≥95%
Molecular Weight:
252.22
Molecular Formula:
C11H12N2O5
For Research Use Only. Not Intended for Diagnostic or Therapeutic Use.
* Refer to Certificate of Analysis for lot specific data.

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5-Ethynyl-2′-deoxyuridine is also known as EdU, 5-EdU, and 2′-Deoxy-5-ethynyluridine. 5-Ethynyl-2′-deoxyuridine is an extensively used nucleoside analog of thymidine used as a probe for DNA synthesis. 5-Ethynyl-2′-deoxyuridine is known as an toxic anti-metabolite, which potentially causes DNA instability, necrosis and cell-cycle arrest therefore 5-Ethynyl-2′-deoxyuridine is often used for short-term DNA synthesis in tissue culture and living organisms where prolonged cell survival is not required. 5-Ethynyl-2′-deoxyuridine can also be used to monitor de novo DNA synthesis through click chemistry. Like 5-bromo-2′-deoxyuridine (sc-290815), 5-Ethynyl-2′-deoxyuridine is incorporated into DNA during active DNA synthesis and can then be detected using a fluorescent azide probe and copper catalysis using 1,3-dipolar cycloaddition.


5-Ethynyl-2′-deoxyuridine (CAS 61135-33-9) References

  1. 5-Alkynyl-2'-deoxyuridines: chromatography-free synthesis and cytotoxicity evaluation against human breast cancer cells.  |  Meneni, S., et al. 2007. Bioorg Med Chem. 15: 3082-8. PMID: 17336074
  2. Detection of S-phase cell cycle progression using 5-ethynyl-2'-deoxyuridine incorporation with click chemistry, an alternative to using 5-bromo-2'-deoxyuridine antibodies.  |  Buck, SB., et al. 2008. Biotechniques. 44: 927-9. PMID: 18533904
  3. Cell type specific applicability of 5-ethynyl-2'-deoxyuridine (EdU) for dynamic proliferation assessment in flow cytometry.  |  Diermeier-Daucher, S., et al. 2009. Cytometry A. 75: 535-46. PMID: 19235202
  4. Synthesis and enzymatic incorporation of modified deoxyuridine triphosphates.  |  Borsenberger, V., et al. 2009. Org Biomol Chem. 7: 3826-35. PMID: 19707689
  5. Evaluation of 5-ethynyl-2'-deoxyuridine staining as a sensitive and reliable method for studying cell proliferation in the adult nervous system.  |  Zeng, C., et al. 2010. Brain Res. 1319: 21-32. PMID: 20064490
  6. Thymidine analogues for tracking DNA synthesis.  |  Cavanagh, BL., et al. 2011. Molecules. 16: 7980-93. PMID: 21921870
  7. Dynamic metabolic labeling of DNA in vivo with arabinosyl nucleosides.  |  Neef, AB. and Luedtke, NW. 2011. Proc Natl Acad Sci U S A. 108: 20404-9. PMID: 22143759
  8. The sub-cellular localization of Sulfolobus DNA replication.  |  Gristwood, T., et al. 2012. Nucleic Acids Res. 40: 5487-96. PMID: 22402489
  9. Proliferation assays (BrdU and EdU) on skeletal tissue sections.  |  Mead, TJ. and Lefebvre, V. 2014. Methods Mol Biol. 1130: 233-243. PMID: 24482177
  10. 5-Ethynyl-2'-deoxycytidine and 5-ethynyl-2'-deoxyuridine are differentially incorporated in cells infected with HSV-1, HCMV, and KSHV viruses.  |  Manska, S., et al. 2020. J Biol Chem. 295: 5871-5890. PMID: 32205447
  11. 5-Ethynyl-2'-Deoxyuridine/Phospho-Histone H3 Dual-Labeling Protocol for Cell Cycle Progression Analysis in Drosophila Neural Stem Cells.  |  Chippalkatti, R. and Suter, B. 2021. J Vis Exp.. PMID: 34028440
  12. EDU (5-Ethynyl-2'-Deoxyuridine)-Coupled Fluorescence-Intensity Analysis: Determining Absolute Parameters of the Cell Cycle.  |  Ferreira, JA., et al. 2021. Methods Mol Biol. 2329: 165-177. PMID: 34085222

Ordering Information

Product NameCatalog #UNITPriceQtyFAVORITES

5-Ethynyl-2′-deoxyuridine, 250 mg

sc-284628
250 mg
$220.00

5-Ethynyl-2′-deoxyuridine, 1 g

sc-284628A
1 g
$582.00

5-Ethynyl-2′-deoxyuridine, 10 g

sc-284628B
10 g
$3641.00

Hi What is the difference between: 284628, 284628A, and 284628B? is it the same product? Thanks

Asked by: MariaRRRRRRRRRR
Thank you for your question. These are all the same product, the difference is in the amount provided.
Answered by: Technical Support
Date published: 2019-02-23

The A version seems to be well dissolved in 20% DMSO diluted in 0.1M PBS

Asked by: MariaRRRRRRRRRR
Thank you for this information.
Answered by: Technical Support
Date published: 2019-02-23

I need to IP multiple times Edu to my experimental animals so a) Can I dissolve Edu in small volume DMSO followed by saline? b) Will Edu dissolved in DMSO precipitate while making it in saline? c)Can I use PBS instead of Saline

Asked by: Sonali
Thank you for your question. Unfortunately we are not able to provide that information. Our compounds are not pharmaceutical grade and not manufactured under GMP guidelines. Please consult your principal investigator and your animal care and use committee (ACUC) regarding the use of our compounds.
Answered by: Technical Support
Date published: 2020-12-04

Can I dissolve EdU in heptane or Octane?

Asked by: Chhavi
Thank you for your question. 5-Ethynyl-2′-deoxyuridine (CAS 61135-33-9) will be either insoluble in these solvents or have very little solubility. It is soluble in methanol, DMSO, water (slightly), DMF, and chloroform.
Answered by: Technical Support
Date published: 2017-06-01

Can I make a stock solution with water for storage? And what would storage conditions be?

Asked by: two2igm05
It is recommended to use the stock solution within the same day it is made. If you need to store the solution, we suggest aliquoting the stock solution into workable amounts and then store at -20º C for up to a month.
Answered by: Chemical Support 4
Date published: 2017-03-05

What is the solubility of this product in DMSO?

Asked by: hawkeye11
Thank you for your question. In DMSO, this product is soluble up to 200mM. It is also slightly soluble in water and methanol. Please contact Technical Service if you have further questions concerning this product.
Answered by: Tech Service 9
Date published: 2017-03-05

How long can you store EdU that has been diluted in 1xPBS?

Asked by: Iker
Thank you for your question. We do not have any information regarding this product being dissolved with 1xPBS. We recommend methanol, DMSO, DMF or chloroform. It is also slightly soluble in water. It is recommended to use the stock solution within the same day it is made. If you need to store the solution, we can suggest aliquoting the stock solution into workable amounts and then store at -20ºC for up to a month. Please contact Technical Service by phone, (800)-457-3801 option 2, email <scbt@scbt.com>, or by live chat directly on our website, www.scbt.com if you have any further questions.
Answered by: Tech Service
Date published: 2016-10-18
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Rated 5 out of 5 by from Works great!It works great both in vitro and in vivo. Much cheaper than other suppliers.
Date published: 2019-04-03
Rated 5 out of 5 by from The A form is goodThe A form is good, got good results.
Date published: 2015-05-12
Rated 5 out of 5 by from Worked well in our experimentsWorked well in our experiments, no complaints
Date published: 2015-05-04
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5-Ethynyl-2′-deoxyuridine is rated 5.0 out of 5 by 3.
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