GLI-1/GLI1 CRISPR/Cas9 KO Plasmid (h2): sc-400266-KO-2
- Target species: human
- 20 µg of transfection-ready, purified plasmid DNA; Suitable for up to 20 transfections
- GLI-1/GLI1 CRISPR/Cas9 Knockout (KO) Plasmid (h2) is a pool of plasmids, each encoding Cas9 nuclease and a target-specific 20 nt guide RNA (gRNA) designed for maximum knockout efficiency using sequences derived from the GeCKO v2 library
- gRNA sequences direct Cas9 to induce site-specific double-strand breaks (DSBs) in the GLI-1/GLI1 genomic locus, resulting in gene knockout through non-homologous end joining (NHEJ)
- GLI-1/GLI1 HDR Plasmid (h2) (sc-400266-HDR-2) is recommended for co-transfection with GLI-1/GLI1 CRISPR/Cas9 KO Plasmid (h2) to enable selection of successfully edited cells through HDR-mediated integration of a puromycin resistance cassette and RFP reporter gene
- GLI-1/GLI1 HDR Plasmid (h2) is a pool of plasmids, each containing a homology-directed repair (HDR) template corresponding to the gRNA target sites in the GLI-1/GLI1 CRISPR/Cas9 KO Plasmid (h2)
- Each HDR plasmid contains two ~800 bp homology arms flanking the puromycin resistance and RFP cassettes, designed to bind genomic DNA sequences surrounding the Cas9-induced double-strand break site and facilitate precise HDR-mediated integration
- The puromycin resistance and RFP genes are flanked by LoxP sites, enabling removal of selection markers via Cre recombinase (Cre Vector: sc-418923) after establishing stable knockout cell lines
- Following transfection, gene knockout efficiency can be assayed by WB, IF or IHC using antibody: GLI-1/GLI1 Antibody (C-1): sc-515751
Ordering Information
| Product Name | Catalog # | UNIT | Price | Qty | FAVORITES | |
GLI-1/GLI1 CRISPR/Cas9 KO Plasmid (h2) | sc-400266-KO-2 | 20 µg | $397.00 | |||
GLI-1/GLI1 HDR Plasmid (h2) | sc-400266-HDR-2 | 20 µg | $445.00 |
Overview
GLI1 encodes a zinc-finger transcription factor that functions as a principal effector of Hedgehog signaling, integrating cues downstream of PTCH1 and SMO to regulate gene programs controlling proliferation, lineage commitment, and tissue patterning. GLI-1/GLI1 modulates transcription of pathway-responsive targets involved in cell-cycle progression, stem-like phenotypes, and epithelial–mesenchymal plasticity, and it can also be influenced by crosstalk with TGF-β, RAS/MAPK, and PI3K/AKT signaling. Dysregulated GLI1 activity is frequently used as a readout of aberrant Hedgehog pathway output in cancer biology, where altered GLI-dependent transcription has been associated with oncogenic growth and treatment resistance mechanisms. GLI1 is therefore broadly relevant for studying transcriptional network rewiring, developmental signaling reactivation, and pathway-dependent phenotypes in human cell models.
GLI-1/GLI1 CRISPR/Cas9 KO Plasmid (h2) is a pool of plasmids designed for targeted disruption of the GLI1 gene in human cell lines. Each plasmid in the pool co-expresses a unique sgRNA, targeting a distinct site within the GLI1 locus, alongside the Streptococcus pyogenes Cas9 nuclease, and encodes GFP to enable fluorescent identification and enrichment of successfully transfected cells. This multi-guide strategy increases the likelihood of inducing frameshifts or deletions that produce a functional knockout, offering a more robust alternative to single-guide approaches. DSBs induced at multiple sites are resolved through non-homologous end joining (NHEJ) or, when used with the included HDR donor template, homology-directed repair (HDR) at a defined target site within the locus.
When used in conjunction with the RFP-expressing HDR donor, GFP and RFP fluorescence can be used together to distinguish transfected from edited cell populations, streamlining flow cytometry-based sorting and clone selection workflows.
Homology-Directed Repair (HDR) Donor — Puromycin Cassette with RFP Reporter
For applications requiring confirmed, selectable knockout clones, GLI-1/GLI1 HDR Plasmid (h2) includes an HDR donor construct containing a puromycin resistance cassette (PuroR) and a red fluorescent protein (RFP) reporter, flanked by homology arms specific to a defined GLI1 target site.
When co-transfected with GLI-1/GLI1 CRISPR/Cas9 KO Plasmid (h2):
- The PuroR-RFP cassette integrates at the Cas9 cut site via HDR, disrupting the GLI1 open reading frame.
- RFP fluorescence provides an immediate visual indicator of successful integration, enabling fluorescence-based identification or sorting of edited cells prior to or alongside puromycin selection.
- Successfully edited cells are confirmed through puromycin resistance, substantially reducing clone screening burden.
- This selection strategy is ideal for generating stable, clonal KO cell lines for downstream functional studies, drug screening, or model development.
Cre-lox Cassette Removal System
The HDR donor construct features loxP sites flanking the PuroR-RFP selection cassette to allow clean marker removal following clone confirmation. Transient expression of Cre recombinase via the included Cre Vector: sc-418923 excises the cassette, leaving a minimal residual loxP site within the GLI1 locus and eliminating potential confounding effects on downstream assays.
This two-step approach:
- Minimizes disruption to local chromatin architecture and neighboring regulatory elements
- Restores a near-native genomic context at the edited locus
- Enables reuse of the puromycin selection strategy in the same cell line for additional edits
Key Features
- gRNA targeting GLI1 exon(s) critical for GLI-1/GLI1 function
- Co-expression of SpCas9 and sgRNA from a single plasmid for simplified delivery
- HDR donor with puromycin resistance for positive clone selection
- loxP-flanked PuroR cassette with Cre recombinase vector for seamless marker removal
- Supplied ready to use for delivery by transfection
For Research Use Only. Not Intended for Diagnostic or Therapeutic Use.