Date published: 2025-12-17

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MBD3 Inhibitors

MBD3 inhibitors belong to a distinct chemical class of compounds that specifically target the Methyl-CpG-binding domain protein 3 (MBD3). MBD3 is a vital component of the nucleosome remodeling and deacetylase (NuRD) complex, which plays a crucial role in the regulation of gene expression and chromatin remodeling. These inhibitors are designed to modulate the activity of MBD3 by interfering with its binding to methylated DNA regions, ultimately influencing the epigenetic landscape of the cell. MBD3 itself is an essential epigenetic reader protein, which means it recognizes and binds to methylated cytosine residues within DNA, thus contributing to the regulation of gene expression patterns. By inhibiting MBD3, these compounds have the potential to influence chromatin structure, gene transcription, and ultimately, cellular behavior. The development of MBD3 inhibitors represents a significant advance in the field of epigenetics, as they provide a tool to explore the intricacies of gene regulation and chromatin dynamics. Researchers are actively investigating the effects of MBD3 inhibition on various cellular processes, including cell differentiation, proliferation, and development. Moreover, these inhibitors can shed light on the specific roles of MBD3 within the NuRD complex and its interactions with other epigenetic factors. Understanding the mechanisms of MBD3 inhibitors can contribute to unraveling the complexities of epigenetic regulation and may hold promise for potential applications in various fields, although these implications fall outside the scope of this description.
Product NameCAS #Catalog #QUANTITYPriceCitationsRATING

RG 108

48208-26-0sc-204235
sc-204235A
10 mg
50 mg
$128.00
$505.00
2
(1)

RG108 is a DNA methyltransferase (DNMT) inhibitor that directly inhibits MBD3 recruitment to methylated DNA, leading to transcriptional derepression of MBD3-targeted genes.

RGFP 109

1215493-56-3sc-477157
10 mg
$300.00
(0)

RG2833 is a selective HDAC3 inhibitor that indirectly affects MBD3 by modulating histone acetylation, leading to altered chromatin structure and gene expression.

Zebularine

3690-10-6sc-203315
sc-203315A
sc-203315B
10 mg
25 mg
100 mg
$126.00
$278.00
$984.00
3
(1)

Zebularine is a DNMT inhibitor that, like 5-Azacytidine, reduces DNA methylation, indirectly impacting MBD3 binding and gene expression.

Methylstat

1310877-95-2sc-507374
10 mg
$480.00
(0)

Methylstat is a small molecule that specifically inhibits MBD2/3 binding to methylated DNA by disrupting the MBD-DNA interaction.

RG-7112

939981-39-2sc-507292
10 mg
$520.00
(0)

RG7112 is a Nutlin-like MDM2 antagonist, which indirectly modulates MBD3 activity by affecting p53-dependent signaling pathways.

Scriptaid

287383-59-9sc-202807
sc-202807A
1 mg
5 mg
$63.00
$179.00
11
(2)

Scriptaid is an HDAC inhibitor that, by altering histone acetylation patterns, indirectly impacts MBD3-mediated gene repression.

SGI-1027

1020149-73-8sc-473875
10 mg
$209.00
(0)

SGI-1027 is a DNMT inhibitor that reduces DNA methylation, leading to changes in gene expression involving MBD3.

UNC 0224

1197196-48-7sc-362816
sc-362816A
10 mg
50 mg
$194.00
$816.00
(0)

UNC0224 is an MBD2/3-selective inhibitor that directly competes with MBD3 for binding to methylated DNA sequences.

Mithramycin A

18378-89-7sc-200909
1 mg
$54.00
6
(1)

Mithramycin A is a DNA-binding molecule that indirectly affects MBD3 by altering chromatin structure and gene expression.

3-Deazaneplanocin, HCl salt

120964-45-6sc-351856
sc-351856A
sc-351856B
1 mg
5 mg
10 mg
$251.00
$600.00
$918.00
2
(1)

DZNep is an EZH2 inhibitor that indirectly modulates MBD3 activity by affecting histone methylation and gene expression.