YTHDF2 inhibitors as a chemical class are compounds that interface with the cellular machinery governing RNA methylation patterns, particularly the m^6A modification on RNA. This interface can occur through direct competition at the recognition site of YTHDF2 or by altering the substrate availability, enzyme activity, or expression levels within the m^6A pathway. The activity of such inhibitors encompasses a range of biochemical interactions. It includes competing analogs that mimic the m^6A structure, such as 7-Methylguanosine, and extends to compounds that can alter the levels of global or gene-specific m^6A modifications, like S-Adenosylmethionine or its cycle inhibitors. This can result in changes in the binding efficiency of YTHDF2 to its target mRNAs, thereby modulating its functional output.
Furthermore, by influencing the expression of enzymes involved in m^6A deposition or removal, or by impacting the availability of methylation donors, such inhibitors indirectly modulate the activity of YTHDF2. Some compounds achieve this by targeting DNA or histone methylation, like RG108 or BIX-01294, thereby exerting a more upstream effect on gene expression patterns, including those coding for components of the m^6A machinery. The overarching impact of these molecules lies in the alteration of cellular methylome and, subsequently, the transcriptome, which in turn influences the RNA decay processes governed by YTHDF2.
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| Product Name | CAS # | Catalog # | QUANTITY | Price | Citations | RATING |
|---|---|---|---|---|---|---|
Ademetionine | 29908-03-0 | sc-278677 sc-278677A | 100 mg 1 g | $184.00 $668.00 | 2 | |
Donor of the methyl group for m^6A modifications; altering its levels can affect global m^6A modification patterns and potentially YTHDF2 activity. | ||||||
RG 108 | 48208-26-0 | sc-204235 sc-204235A | 10 mg 50 mg | $131.00 $515.00 | 2 | |
A DNA methyltransferase inhibitor that indirectly affects methylation patterns, which may influence m^6A modification and YTHDF2 recognition. | ||||||
1-Aminocyclopentanecarboxylic acid | 52-52-8 | sc-202392 | 1 g | $23.00 | ||
An inhibitor of S-adenosylmethionine-dependent methyltransferases, could indirectly affect the methylation levels of mRNAs and thus YTHDF2 activity. | ||||||
5-Azacytidine | 320-67-2 | sc-221003 | 500 mg | $280.00 | 4 | |
Another DNA methyltransferase inhibitor that changes global and gene-specific methylation patterns, which could affect m^6A levels and YTHDF2 activity. | ||||||
Mithramycin A | 18378-89-7 | sc-200909 | 1 mg | $55.00 | 6 | |
An anticancer antibiotic that binds to G-C rich DNA sequences, potentially affecting the expression of genes involved in the methylation pathway and YTHDF2 function. | ||||||
Retinoic Acid, all trans | 302-79-4 | sc-200898 sc-200898A sc-200898B sc-200898C | 500 mg 5 g 10 g 100 g | $66.00 $325.00 $587.00 $1018.00 | 28 | |
A molecule that regulates gene expression and could influence the expression of enzymes involved in m^6A RNA methylation, indirectly affecting YTHDF2. | ||||||
Histone Lysine Methyltransferase Inhibitor Inhibitor | 935693-62-2 (free base) | sc-202651 | 5 mg | $151.00 | 4 | |
A histone lysine methyltransferase inhibitor which could alter chromatin state and gene expression, possibly impacting YTHDF2 activity. | ||||||
Epz004777 | 1338466-77-5 | sc-507560 | 100 mg | $575.00 | ||
A DOT1L inhibitor that affects histone methylation and can lead to downstream effects on RNA methylation and YTHDF2 activity. | ||||||
Pyridostatin | 1085412-37-8 | sc-476422 | 10 mg | $350.00 | ||
A G-quadruplex stabilizer, it can influence the transcription of certain genes, potentially affecting the levels of m^6A-modified mRNA and YTHDF2 interaction. | ||||||