Date published: 2026-5-28

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Mitochondrial Topo I Inhibitors

Mitochondrial Topo I inhibitors represent a diverse assembly of chemicals that target the relaxation activity of supercoiled DNA by topoisomerase I within the mitochondria. Many of these inhibitors, such as Camptothecin and its derivatives like Topotecan and Irinotecan, operate by stabilizing the transient breakage of DNA strands, effectively forming a cleavable complex between the DNA and the enzyme. The stabilization of this complex obstructs the usual DNA repair mechanisms, leading to strand breaks.While Camptothecin-derived inhibitors are widely recognized for their role, other compounds like β-Lapachone and Indenoisoquinolines also offer unique mechanisms of action. For example, β-Lapachone can induce DNA damage via a pathway involving Topo I inhibition, while Indenoisoquinolines, as non-camptothecin inhibitors, bind to the enzyme-DNA complex and block DNA re-ligation. Additionally, natural compounds, ranging from flavonoids like Acacetin and Genistein to marine alkaloids like Lamellarin D, contribute to this category, emphasizing the broad spectrum of structures and origins these inhibitors come from.
Product NameCAS #Catalog #QUANTITYPriceCitationsRATING

Camptothecin

7689-03-4sc-200871
sc-200871A
sc-200871B
50 mg
250 mg
100 mg
$58.00
$186.00
$94.00
21
(2)

Camptothecin acts as a potent inhibitor of mitochondrial Topoisomerase I, engaging in specific interactions that disrupt DNA relaxation processes. Its unique structure allows for intercalation into the DNA helix, stabilizing the enzyme-DNA complex and preventing the re-ligation of DNA strands. This results in the accumulation of DNA breaks, influencing cellular pathways and apoptosis. The compound's hydrophobic characteristics enhance its membrane permeability, facilitating cellular uptake and interaction with mitochondrial targets.

Topotecan

123948-87-8sc-338718
100 mg
$582.00
(0)

Derived from camptothecin; it interferes with the breaking and rejoining of DNA by Topo I.

(+)-Irinotecan

97682-44-5sc-269253
10 mg
$62.00
1
(1)

A derivative of camptothecin; forms a ternary complex with DNA and Topo I, preventing DNA re-ligation.

β-Lapachone

4707-32-8sc-200875
sc-200875A
5 mg
25 mg
$112.00
$459.00
8
(1)

Causes DNA damage by a mechanism that involves Topo I inhibition.

Daunorubicin hydrochloride

23541-50-6sc-200921
sc-200921A
sc-200921B
sc-200921C
10 mg
50 mg
250 mg
1 g
$105.00
$438.00
$837.00
$1569.00
4
(1)

While primarily a Topo II inhibitor, it also has some inhibitory effects on Topo I.

Acacetin

480-44-4sc-239178
25 mg
$260.00
2
(1)

A flavonoid that has been shown to inhibit Topo I activity.

Genistein

446-72-0sc-3515
sc-3515A
sc-3515B
sc-3515C
sc-3515D
sc-3515E
sc-3515F
100 mg
500 mg
1 g
5 g
10 g
25 g
100 g
$45.00
$164.00
$200.00
$402.00
$575.00
$981.00
$2031.00
46
(1)

Besides its other cellular effects, this isoflavone can also inhibit Topo I.

Berberine

2086-83-1sc-507337
250 mg
$92.00
1
(0)

An isoquinoline alkaloid that has been shown to inhibit the function of Topo I.