Date published: 2025-12-24

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Mitochondrial Marker Inhibitors

The class of chemicals known as Mitochondrial Marker Inhibitors encompasses compounds that interfere with the normal functions and signaling pathways of mitochondria, rather than inhibiting a singular protein. These chemicals act on various components of the electron transport chain (ETC), the ATP synthesis machinery, or the transport processes across the mitochondrial membrane. By targeting these critical aspects of mitochondrial function, they can induce a state of mitochondrial dysfunction, which includes inhibition of ATP production, disruption of the mitochondrial membrane potential, and alteration of normal metabolic processes.

Compounds such as rotenone and sodium azide directly inhibit specific complexes within the ETC, thereby halting the flow of electrons necessary for the generation of ATP. Other inhibitors, like oligomycin and antimycin A, bind to different sites on the ETC complexes and obstruct their activity. This leads to a reduction in the mitochondrial membrane potential, a vital driving force behind ATP synthesis. Additionally, certain chemicals operate by uncoupling the oxidative phosphorylation process, such as CCCP and FCCP. These protonophores dissipate the electrochemical gradient across the mitochondrial membrane, decoupling the ETC from ATP synthesis. In the absence of a proton gradient, the ATP synthase cannot function effectively, resulting in decreased ATP production. Furthermore, some inhibitors affect the transport of metabolites into and out of the mitochondria. Atractyloside and bongkrekic acid, for example, inhibit the adenine nucleotide translocator, crucial for maintaining the exchange of ADP and ATP between the mitochondrial matrix and the cytosol. Valinomycin disrupts the ionic balance by facilitating the transport of potassium ions, which can also compromise the mitochondrial membrane potential.

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Product NameCAS #Catalog #QUANTITYPriceCitationsRATING

Rotenone

83-79-4sc-203242
sc-203242A
1 g
5 g
$89.00
$254.00
41
(1)

Inhibits mitochondrial complex I of the electron transport chain, disrupting ATP synthesis and inducing mitochondrial dysfunction.

Antimycin A

1397-94-0sc-202467
sc-202467A
sc-202467B
sc-202467C
5 mg
10 mg
1 g
3 g
$54.00
$62.00
$1642.00
$4600.00
51
(1)

Binds to mitochondrial complex III, blocking electron transfer and inhibiting ATP production.

Oligomycin

1404-19-9sc-203342
sc-203342C
10 mg
1 g
$146.00
$12250.00
18
(2)

Inhibits mitochondrial ATP synthase (complex V), preventing ATP synthesis.

Carbonyl Cyanide m-Chlorophenylhydrazone

555-60-2sc-202984A
sc-202984
sc-202984B
100 mg
250 mg
500 mg
$75.00
$150.00
$235.00
8
(1)

Uncouples oxidative phosphorylation by dissipating the proton gradient across the mitochondrial membrane.

Sodium azide

26628-22-8sc-208393
sc-208393B
sc-208393C
sc-208393D
sc-208393A
25 g
250 g
1 kg
2.5 kg
100 g
$42.00
$152.00
$385.00
$845.00
$88.00
8
(2)

Inhibits mitochondrial complex IV by binding to the heme cofactor, interrupting electron transport and ATP synthesis.

Bongkrekic acid

11076-19-0sc-205606
100 µg
$418.00
10
(1)

Binds to ANT and inhibits its activity, also affecting ADP/ATP exchange in mitochondria.

FCCP

370-86-5sc-203578
sc-203578A
10 mg
50 mg
$92.00
$348.00
46
(1)

Protonophore that uncouples oxidative phosphorylation, collapsing the proton gradient and inhibiting ATP synthesis.

Valinomycin

2001-95-8sc-200991
25 mg
$163.00
3
(1)

Ionophore that selectively transports potassium ions across the mitochondrial membrane, disrupting membrane potential.

Cerulenin (synthetic)

17397-89-6sc-200827
sc-200827A
sc-200827B
5 mg
10 mg
50 mg
$158.00
$306.00
$1186.00
9
(1)

Inhibits fatty acid synthase, affecting lipid metabolism and indirectly impacting mitochondrial function.

2-Thenoyltrifluoroacetone

326-91-0sc-251801
5 g
$36.00
1
(1)

Inhibits mitochondrial complex II, disrupting electron transport and reducing ATP production.