Double-stranded DNA (ds DNA) markers, fundamental tools in molecular biology, serve as essential references for determining the size of DNA fragments through electrophoresis, a technique that separates molecules based on size and charge. These markers consist of a mixture of DNA fragments of known lengths, providing a ladder-like pattern against which the sizes of unknown DNA molecules can be compared. The application of ds DNA markers spans various research and diagnostic fields, enabling scientists to analyze genetic material with precision and accuracy. The functionality of these markers is not inherent to their molecular structure but lies in their ability to act as a comparative scale, facilitating the resolution of complex genetic analyses. Their utility is particularly evident in the fields of genomics, genetics, and molecular biology, where they are indispensable for tasks such as gene mapping, cloning, and PCR analysis. By offering a tangible means to gauge the length of DNA fragments, ds DNA markers have become a cornerstone in the visualization and understanding of genetic materials.
The "activation" of ds DNA markers, in the context of their utility and visibility in experimental protocols, is achieved through indirect methods that enhance their detection and resolution in gel electrophoresis. This process involves the application of various chemicals that bind to DNA, making the markers visible under specific conditions, such as UV light or fluorescence microscopy. The principle behind this lies not in altering the biological function of the markers but in augmenting their detectability for accurate analysis. The interaction between these chemicals and the DNA markers is a critical aspect of molecular biology techniques, enabling the detailed study of genetic sequences. Moreover, the development of safer and more efficient staining agents has significantly improved the resolution and safety of DNA analysis. In addition to staining, the physical properties of the gel matrix and the electrophoresis buffer system play crucial roles in the separation and visualization of ds DNA markers.
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Product Name | CAS # | Catalog # | QUANTITY | Price | Citations | RATING |
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DAPI | 28718-90-3 | sc-3598 | 10 mg | $108.00 | 1211 | |
A fluorescent stain that binds strongly to the adenine-thymine rich regions in ds DNA, enhancing the visualization of ds DNA markers in fluorescence microscopy and UV light-based assays. | ||||||
Acridine Orange solution | 65-61-2 | sc-473594 | 10 ml | $163.00 | 2 | |
A dye that can bind to DNA and RNA, used in fluorescence microscopy and flow cytometry to differentiate between ds DNA and ss DNA, thereby indirectly highlighting ds DNA markers. | ||||||
5-Bromo-2′-deoxyuridine | 59-14-3 | sc-290815 sc-290815A sc-290815B sc-290815C sc-290815D | 50 mg 250 mg 500 mg 1 g 5 g | $49.00 $77.00 $83.00 $126.00 $589.00 | ||
Incorporated into newly synthesized DNA strands during replication, BrdU can be detected using specific antibodies, indirectly marking areas of active DNA synthesis where ds DNA markers may be used for size comparison. | ||||||
Agarose LE (low electroendosmosis) | 9012-36-6 | sc-286959A sc-286959 sc-286959B | 100 g 500 g 1 kg | $129.00 $512.00 $820.00 | ||
A polysaccharide used to form gels for DNA electrophoresis. It provides the medium through which ds DNA markers move, indirectly facilitating their separation and visualization. | ||||||
Sodium tetraborate decahydrate | 1303-96-4 | sc-212947 sc-212947A sc-212947B sc-212947C sc-212947D | 100 g 500 g 2.5 kg 5 kg 10 kg | $39.00 $47.00 $87.00 $148.00 $260.00 | ||
Used in making Borate buffer for DNA electrophoresis, affecting the migration speed of ds DNA markers through gels by stabilizing the gel structure and DNA conformation. | ||||||
Formamide | 75-12-7 | sc-391116 | 100 ml | $83.00 | ||
Used in denaturing gel electrophoresis to separate ds DNA markers based on size by disrupting hydrogen bonds, thus affecting their mobility and enhancing resolution. |