Retinoic acid exerts its effects by binding to retinoic acid receptors, altering gene expression, and potentially enhancing protein synthesis. Concurrently, 5-Azacytidine acts as a DNA methyltransferase inhibitor, promoting gene demethylation and subsequent upregulation of gene expression. Trichostatin A and Sodium butyrate, both histone deacetylase inhibitors, induce chromatin remodeling to facilitate transcriptional activation of various genes. Within the TGF-β signaling axis, SB 431542 specifically inhibits the type I receptor ALK5, altering downstream SMAD signaling and consequently modulating gene expression patterns. Similarly, the PI3K/AKT pathway, a critical node in cell signaling, is targeted by LY294002, which can lead to alterations in protein expression through its inhibitory action on PI3K. PD98059, a specific MEK inhibitor, impacts the MAPK/ERK pathway, further influencing the regulatory mechanisms governing protein expression.
Rapamycin, an mTOR inhibitor, plays a pivotal role in controlling protein synthesis, thus exerting a broad influence on cellular protein levels. In a similar vein of enhancing intracellular signaling, Forskolin raises cAMP levels, a secondary messenger with diverse effects on cellular processes including protein expression. The cellular metabolic state is also a key factor in the modulation of protein activity, with 2-Deoxy-D-glucose inhibiting glycolysis and thus potentially impacting cellular energy balance and protein function. The stability of proteins is of equal importance, where MG132, a proteasome inhibitor, and Chloroquine, a lysosomal degradation inhibitor, act to prevent the breakdown of proteins within the cell. By inhibiting these degradation pathways, they contribute to increased cellular protein abundance.
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